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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00047889001 | ||||||||
Common Name | GSBRNA2T00047889001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 259aa MW: 27910.9 Da PI: 8.7838 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.5 | 8.3e-40 | 53 | 111 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 al+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s+ GSBRNA2T00047889001 53 LALRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 111 5789****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 48 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-34 | 54 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.516 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDHLLQHQDV FSNYNKARDA MGVSSSPNPT EVDHNQKKPS PATGAAKPQP PDLALRCPRC 60 DSTNTKFCYY NNYSLSQPRY FCKSCRRYWT KGGTLRNIPV GGGCRKNKRS TSSATRSLRT 120 TPEPAFSAAS FGGFGNNEHT DLSLAFALLN KQPQGSSSHL GFPSAFGNSS SHQSDMESVF 180 GTSQKNENAG YAFGNGSSGL DMAMSDPNKV LWGFPWQMNG EGFGMMSMGG GGGGHVDQVD 240 SGRELWTNMN YINSGALM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00047889001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC234737 | 1e-119 | AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120539.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.3 | ||||
Swissprot | Q84TE9 | 1e-149 | DOF53_ARATH; Dof zinc finger protein DOF5.3 | ||||
TrEMBL | A0A078H425 | 0.0 | A0A078H425_BRANA; BnaA10g13030D protein | ||||
STRING | Bra002504.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6132 | 18 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-132 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
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